Mass Spectrometry Periodicals

European Journal of Mass Spectrometry
International Journal of Mass Spectrometry
Journal of the American Society for Mass Spectrometry
Journal of Mass Spectrometry
Mass Spectrometry Reviews
Rapid Communications in Mass Spectrometry

See also the biennial review on Mass Spectrometry in Analytical Chemistry

"MS 101"

http://www.asms.org/whatisms/index.html

Techniques, instrumentation

P.E. Miller, M. B. Denton."The quadrupole mass filter; basic operating concepts." J. Chem. Ed. 63, 617-622 (1986).

R.J. Cotter."Time-of-flight mass spectrometry for the structural analysis of biological molecules." Anal. Chem. (1992) 64, 1027A-1039A.

M.L. Vestal, P. Juhasz, S.A. Martin. "Delayed extraction matrix-assisted laser desorption time-of-flight mass spectrometry." Rapid Commun Mass Spectrom. (1995) 9, 1044-1050.

R.S. Bordoli, K. Howes, R.G. Vickers, R.H. Bateman, D.J. Harvey. "Matrix-assisted laser desorption mass spectrometry on a magnetic sector instrument fitted with an array detector." Rapid Commun Mass Spectrom. (1994) 8, 585-589.

O. Vorm, P. Roepstorff, M. Mann "Improved resolution and very high sensitivity in MALDI-TOF of matrix surfaces made by fast evaporation." Anal. Chem. (1994) 66, 3281-3287.

M. Karas, U. Bahr, K. Strupat, F. Hillenkamp, A. Tsarbopoulos, B.N. Pramanik."Matrix dependence of metastable fragmentation of glycoproteins in MALDI-TOF mass spectrometry." Anal. Chem. (1995) 667, 675-679.

S.J. Gaskell "Electrospray: principles and practice." J. Mass Spectrom. (1997) 32, 677-688.

K. R. Jonscher, J.R. Yates, III. "The quadrupole ion trap mass spectrometer - A small solution to a big challenge." Anal. Biochem. (1997) 244, 1-15.

A.N. Krutchinsky, W. Zhang, B.T Chait "Rapidly switchable matrix-assisted laser desorption/ionization and electrospray quadrupole-time-of-flight mass spectrometry for protein identification." J. Am. Soc. Mass Spectrom. (2000) 11, 493-504.

S.E. Martin, J. Shabanowitz, D.F. Hunt, J.A. Marto "Subfemtomole MS and MS?MS peptide sequence analysis using nano-HPLC micro-ESI Fourier transform ion cyclotron resonance mass spectrometry" Anal. Chem. (2000) 72, 4266-4274).

Detectors - http://www.chem.vt.edu/chem-ed/ms/detector/detector.html
Electrospray - http://www-methods.ch.cam.ac.uk/meth/ms/theory/esi.html
FTMS - http://www.ionspec.com/tutorial.html
Ion traps - http://www.che.purdue.edu/cooks/index.html
Isotope Distribution Calculator - http://www.sisweb.com/cgi-bin/mass10.pl
Quadrupole - http://www/rmsb.u-bordeaux2.fr/rmsb/ms/quadrupo.html
QTOF - http://www.trentu.ca/wqc/Instruments1.html


Mass spectrometer manufacturers:

Applied Biosystems
Bruker
Finnigan
Hewlett Packard
IonSpec
Micromass
Sciex
Shimadzu

Measuring intact proteins

B. T. Chait and S. B. H. Kent "Weighing Naked Proteins: Practical, High-Accuracy Mass Measurement of Peptides and Proteins" Science (1992) 257, 1885-1894.

A. Ovenberg, M. Karas, U. Bahr, R. Kaufmann and F. Hillenkampf "Matrix-assisted Infrared-laser (2.94 mm) Desorption/Ionization Mass Spectrometry of Large Biomolecules" Rapid Commun. Mass Spectrom. (1990) 4, 293-296.

M. Karas, A. Ingedoh, U. Bahr and F. Hillenkampf "Ultraviolet-Laser Desortion/Ionization Mass Spectrometry of Femtomolar Amounts of Large Proteins" Biomed. Environ. Mass Spectrom. (1989) 18, 841-843.

R. C. Beavis and B. T. Chait "High-Accuracy Molecular Mass Determination of Proteins Using Matrix-Assisted Laser Desorption Mass Spectrometry" Anal. Chem. (1990) 62, 1836-1840.

A. M. Falick, C. H. L. Shackleton, B. N. Green and H. E. Witkowska "Tandem Mass Spectrometry in the Clinical Analysis of Variant Hemoglobins" Rapid Commun. Mass Spectrom. (1990) 4, 396-400.

P. A. Schindler, A. Van Dorsselaer and A. M. Falick "Analysis of Hydrophobic Proteins and Peptides by Electrospray Ionization Mass Spectrometry" Anal. Biochem. (1993) 213, 256-263.

M. Kanai, K. Yamashita, H. Ideo, T. Ohkura and K. Fukushima "Analysis of Abnormal Glycoproteins of Patients with Carbohydrate Deficient Glycoprotein Syndrome" Proceedings of the 41st ASMS Conference on Mass Spectrometry and Allied Topics, San Francisco , CA (1993) 371a.

J. B. Smith, Y. Sun, D. L. Smith and B. Green "Identification of the posttranslational modifications of bovine lens aB crystallins by mass spectrometry" Protein Science (1992) 1, 601-608.

K. F. Medzihradszky, B. W. Gibson, S. Kaur, Z. Yu, D. Medzihradszky, A. L. Burlingame, N. M. Bass "The primary structure of fatty-acid-binding protein from nurse shark liver. Structural and evolutionary relationship to the mammalian fatty-acid-binding family" Eur. J. Biochem. (1992) 203, 327-339.

Cohen SL, Chait BT. "Mass spectrometry as a tool for protein crystallography" Annu Rev Biophys Biomol Struct., (2001) 30, 67-85.

Figeys D, McBroom LD, Moran MF."Mass spectrometry for the study of protein-protein interactions." Methods, (2001) 24, 230-9.

Mass mapping

V. Ling, A. W. Guzzetta, E. Canova-Davis, J. T. Stults, and W. S. Hancock "Characterization of the Tryptic Map of Recombinant DNA Derived Tissue Plasminogen Activator by High-Performance Liquid Chromatography-Electrospray ionization Mass Spectrometry" Anal. Chem. (1991) 63, 2909-2915.

C. A. Settineri, K. F. Medzihradszky, F. R. Masiarz, C. Chu, C. George-Nascimento, and A. L. Burlingame "Characterization of O-glycosylation Sites in Recombinant B-chain of Platelet-derived Growth Factor Expressed in Yeast Using Liquid Secondary Ion Mass Spectrometry, Tandem Mass Spectrometry and Edman Sequence Analysis" Biomed. Environ. Mass Spectrom. (1990) 19, 665-676.

D. Hess, T. C. Covey, R. Winz, R. W. Brownsey and R. Aebersold "Analytical and micropreparative peptide mapping by high performance liquid chromatography/electrospray mass spectrometry of proteins purified by gel electrophoresis" Protein Science (1993) 2, 1342-1351.

T. M. Billeci and J. T. Stults "Tryptic Mapping of Recombinant Proteins by Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry" Anal. Chem. (1993) 65, 1709-1716.

In-gel digestion J. Rosenfeld, J. Capdevielle, J. C. Guillemot, P. Ferrara, Anal. Biochem. (1992) 203, 173-179.

Proteolytic digestions L. R. Riviere, M. Fleming, C. Elicone and P. Tempst "Study and Applications of the Effects of Detergents and Chaotropes on Enzymatic Proteolysis" Techniques in Protein Chemistry II (J. J. Villafranca ed.) (1991) Academic Press, San Diego, 171-179.

Peptide fragmentation, sequencing

A. A. Kiryushkin, H. M. Fales, T. Axenrod, E. J. Gilbert and G. W. A. Milne "Chemical Ionization Mass Spectrometry of Complex Molecules - VI: Peptides" Org. Mass Spectrom. (1971) 5, 19-31.

Gas-Phase Ion Decompositions Occurring Remote to a Charge Site "N. J. Jensen, K. B. Tomer and M. L. Gross" J. Am. Chem. Soc. (1985) 107, 1863-1868.

R. S. Johnson, S. A. Martin and K. Biemann "Collision-Induced Fragmentation of (M+H)+ Ions of Peptides. Side Chain Specific Sequence Ions" Int. J. Mass Spectrom. Ion Processes (1988) 86, 137-154.

R. S. Johnson, S. A. Martin, J. T. Stults, J. T. Watson and K. Biemann "Novel Fragmentation Process of Peptides by Collision-Induced Decomposition in a Tandem Mass Spectrometer: Differentiation of Leucine and Isoleucine" Anal. Chem. (1987) 59, 2621-2625.

D. F. Hunt, N. Z. Zhu, J. Shabanowitz "Oligopeptide Sequence Analysis by Collision-activated Dissociation of Multiply Charged Ions" Rapid Commun. Mass Spectrom. (1989) 3, 122-124.

M. F. Bean and S. A. Carr, G. C. Thorne, M. H. Reilly and S. J. Gaskell "Tandem Mass Spectrometry of Peptides Using Hybrid and Four-Sector Instruments: A Comparative Study" Anal. Chem. (1991) 63, 1473-1481.

K.F. Medzihradszky, A.L. Burlingame. "The Advantages and Versatility of a High Energy Collision-Induced Dissociation Based Strategy for the Sequence and Structural Determination of Proteins." Methods: A Companion to Methods in Enzymology 6, 284-303 (1994).

P. Chaurand, F. Luetzenkirchen, B. Spengler, "Peptide and protein identification by Matrix-assisted laser desorption ionization (MALDI) and MALDI-post-source-deacy time-of-flight mass spectrometry." J. Am. Soc. Mass Spectrom., 10, 91-103 (1999).

K.F. Medzihradszky, J. M. Campbell, M.A. Baldwin, A.M. Falick, P. Juhasz, M.A. Vestal, A.L. Burlingame. "The characteristics of peptide collision-induced dissociation using a high performance MALDI-TOF/TOF Tandem Mass Spectrometer." Anal. Chem. 72, 552-558 (2000).

Assigning covalent modifications - post-translational or xenobiotic modifications, chemical labels etc.

T. E. Dever, C. E. Costello, C. L. Owens, T. L. Rosenberry, and W. C. Merrick "Location of Seven Post-translational Modifications in Rabbit Elongation Factor 1a Including Dimethyllysine, Trimethyllysine, and Glycerylphosphorylethanolamine" J. Biol. Chem. (1989) 264, 20518-20525.

E. A. Everett, A. M. Falick, and N. O. Reich "Identification of a Critical Cysteine in EcoRI DNA Methyltransferase by Mass Spectrometry" J. Biol. Chem. (1990) 265, 17713-17719.

A. Ding, J. C. Ojingwa, A. F. McDonagh, A. L. Burlingame and L. Z. Benet "Evidence for covalent binding of acyl glucuronides to serum albumin via an imine mechanism as revealed by mass spectrometry" Proc. Natl. Acad. Sci. USA (1993) 90, 3797-3801.

A. K. Erickson, D. M. Payne, P. A. Martino, A. J. Rossomando, J. Shabanowitz, M. J. Weber, D. F. Hunt and T. W. Sturgill "Identification by Mass Spectrometry of Threonine 97 in Bovine Myelin Basic Protein as a Specific Phosphorylation Site for Mitogen-activated Protein Kinase" J. Biol. Chem. (1990) 265, 19728-19735.

D. D. Buechter, K. F. Medzihradszky, A. L. Burlingame and G. L. Kenyon "The Active Site of Creatine Kinase. Affinity Labeling of Cysteine 282 with N-(2,3-epoxypropyl)-N-amidinoglycine" J. Biol. Chem. (1992) 267, 2173-2178.

Carr, S. A.; Huddleston, M. J.; Bean, M. F. "Selective identification and differentiation of N-linked and O-linked oligosaccharides in glycoproteins by liquid chromatography-mas spectrometry" Protein Science (1993) 2, 183-196.

S.X. Wang, M. Murae, K.F. Medzihradszky, A.L. Burlingame, D.E. Brown, D.M. Dooley, A.J. Smith, H.M. Kagan, J.P. Klinman." A Crosslinked Cofactor in Lysyl Oxidase: Redox Function for Amino Acid Side Chains." Science 273, 1078-1084 (1996).

S.A. Carr, M.J. Huddleston, R.S. Annan "Selective detection and sequencing of phosphopeptides at the femtomole level by mass spectrometry." Anal. Biochem. (1996) 239, 180-192.

D.C.A. Neville, C.R. Rozanas, E.M. Price, D.B. Grius, A.S. Verkman, R.R. Townsend "Evidence for phosphorylation of serine 753 in CFTR using a novel metal-ion affinity resin and matrix-assisted laser desorption mass spectrometry." Protein science (1997) 6, 2436-2445.

Mandell, JG; Falick, AM; Komives, EA. "Identification of protein-protein interfaces by decreased amide proton solvent accessibility." Proc. Natl. Acad. Sci. USA (1998) 95, 4705-10.

G. Neubauer, M. Mann "Mapping of phosphorylation sites of gel-isolated proteins by nanoelectrospray tandem mass spectrometry: potentials and limitations" Anal. Chem. (1999) 71, 235-242.

M.C. Posewitz, P. Tempst "Immobilized gallium(III) affinity chromatography of phosphopeptides." Anal. Chem. (1999) 71, 2883-2892.

E. Stimson, J. Hope, A. Chong, A.L. Burlingame "Site-specific characterization of the N-linked glycans of murine prion protein by high-performance liquid chromatography/electrospray mass spectrometry and exoglycosidase digestions." Biochemistry (1999) 38, 4885-4895.

Young, MM; Tang, N; Hempel, JC; Oshiro, CM; Taylor, EW; Kuntz, ID; Gibson, BW; Dollinger, G. "High throughput protein fold identification by using experimental constraints derived from intramolecular cross-links and mass spectrometry." Proc. Natl. Acad. Sci. USA (2000) 97, 5802-6.

J. Hofsteenge, K.G. Huwiler, B. Macek, D. Hess, J. Lawler, D.F. Mosher, J. Peter-Katalinic "C-mannosylation and O-fucosylation of the thrombospondin type 1 module." J. Biol. Chem (2001) 276, 6485-6498.

Proteomics

A. Shevchenko, M. Wilm, O. Vorm, M. Mann. "Mass spectrometric sequencing of proteins from silver-stained polyacrilamide gels." Anal. Chem. (1996) 68, 850-858.

Lamond and M. Mann, "Cell Biology and the Genome Projects - A Concerted Strategy for Characterizing Multiprotein Complexes by Using Mass Spectrometry," Trends Cell Biol. 1997, 7, 139-142

Gygi, S. P; Aebersold, R. "Mass spectrometry and proteomics" Curr. Opin. Chem. Biol. (2000) 4, 489-494.

Gygi, SP; Rist, B; Aebersold, R. "Measuring gene expression by quantitative proteome analysis." Current Opinion in Biotechnology (2000) 11, 396-401.

A. Pandey, M. Mann." Proteomics to study genes and genomes." Nature (2000) 405, 837-846.

M.J. Chalmers, S.J. Gaskell"Advances in mass spectrometry for proteome analysis." Current Opinion in Biotechnology (2000) 11, 384-390.

D. Greenbaum, K.F. Medzihradszky, A.L. Burlingame, M. Bogyo. "Epoxide electrophiles as activity-dependent cysteine-protease profiling and discovery tools." Chemistry and Biology 7, 569-581 (2000).

Appella, E. Arnott, D. Sakaguchi, K. and Wirth P.J."Proteome mapping by two-dimensional polyacrylamide gel electrophoresis in combination with mass spectrometric protein sequence analysis" EXS. (2000) 88, 1-27.

B. Kuster, P. Mortenssen, J.S. Andersen, M. Mann." Mass spectrometry allows direct identification of proteins in large genomes." Proteomics (2001) 1, 641-650.

Software

D. Fenyo Identifying the proteome: software tools. Current Opinion in Biotechnology (2000) 11, 391-395.

Protein prospector: http://www.prospector.ucsf.edu
Mascot : http://www.matrixscience.com


Reviews on the MS of other biological substances

Deforce, D.L. and Van den Eeckhout, E.G. "Analysis of oligonucleotides by ESI-MS." Adv Chromatogr. (2000) 40, 539-66.

Dell A, Morris HR." Glycoprotein structure determination by mass spectrometry," Science, (2001) 291, 2351-6.

Griffin, T.J. and Smith. L.M." Single-nucleotide polymorphism analysis by MALDI-TOF mass spectrometry." Trends Biotechnol. (2000) 18, 77-84.

Harvey, D.J." Matrix-assisted laser desorption/ionization mass spectrometry of carbohydrates." Mass Spectrom. Rev. (1999) 18, 349-451.